PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000327.1_g00037.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 441aa    MW: 48522.8 Da    PI: 8.6727
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000327.1_g00037.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-055880123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C++C+k F r  nL+ H r H
  Itr_sc000327.1_g00037.1 58 FVCEICNKGFQRDQNLQLHRRGH 80
                             89*******************88 PP

2zf-C2H212.40.00048134156123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C+k +  +s+ k H +t+
  Itr_sc000327.1_g00037.1 134 WKCEKCSKFYAVQSDWKAHSKTC 156
                              58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-55780IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.97E-65780No hitNo description
PfamPF121716.8E-55880IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495880IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-4122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.97E-6129154No hitNo description
SMARTSM00355190134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MFPDQELSVS ALNPMLLHSA IDEQPQKMKK KRNLPGNPDP DAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLKQRS NKENRKRVYV CPEPTCVHHH PSRALGDLTG  120
IKKHFCRKHG EKKWKCEKCS KFYAVQSDWK AHSKTCGTRE YRCDCGTLFS RKDSFITHRA  180
FCDALAEESA RLSANSILLM HPTSTASLTT GAPPITAQMQ PSFHLNPSSL FPNAPPQRHF  240
ANPPSPIMSG GQHISLSSPW DAPPSQNPNH HPLPMIKTEE SMGLPPYFQE PPPLMAASGS  300
SAVLSATALL QKAASIGATV GHVNSSMAQL DRGTVGHVNM KMAPHDYLGF ATWQKGDPLT  360
RDFLGLTADH ESSSARDHDH HRLLSYAAAA GGGGGGVDEL FPSSSTNNSM YNERDNSLFK  420
HHQLSFGFAA AETASETWGN C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786203.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_016477693.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotO227591e-124IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLM1BPB71e-163M1BPB7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000497881e-163(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-123indeterminate(ID)-domain 12